Responses of Soil Microbial Networks to Nitrogen Deposition and Their Regulatory Effects on Carbon Sink Function in Subtropical Agroforestry Systems

Metabolic Systems Biology and Omics

Articles

Responses of Soil Microbial Networks to Nitrogen Deposition and Their Regulatory Effects on Carbon Sink Function in Subtropical Agroforestry Systems

Authors

  • Garcia Luis

    Department of Environmental Science, University of Barcelona, Barcelona 08028, Spain

Nitrogen (N) deposition has become a key global change factor affecting soil carbon (C) sink function in subtropical agroforestry systems (AFSs). Soil microbes are the core drivers of soil C cycling, and their community interactions (microbial networks) play critical roles in maintaining microbial functional stability and regulating C transformation processes. However, how N deposition affects soil microbial network complexity, keystone taxa, and their linkages with soil C sink function in subtropical AFSs remains unclear. Here, we conducted a 3-year N deposition manipulation experiment (0, 50, 100, 150 kg N ha⁻¹ yr⁻¹) in three typical subtropical AFSs (tea-oil camellia + clover, chestnut + wheat, and bamboo + peanut). High-throughput sequencing, co-occurrence network analysis, and soil C pool determination were used to explore the responses of bacterial and fungal networks to N deposition and their regulatory effects on soil C sink function. Results showed that: (1) N deposition significantly altered soil microbial network structure: low N deposition (50 kg N ha⁻¹ yr⁻¹) increased network complexity (nodes, edges, average degree) by 12.3%-18.7%, while high N deposition (100, 150 kg N ha⁻¹ yr⁻¹) decreased network complexity by 15.6%-24.5%, with the strongest inhibition in bamboo + peanut AFS; (2) Keystone taxa shifted under N deposition: low N favored copiotrophic taxa (e.g., Proteobacteria, Ascomycota), while high N promoted oligotrophic taxa (e.g., Acidobacteria, Basidiomycota); (3) Soil total organic C (SOC), microbial biomass C (MBC), and recalcitrant C contents first increased and then decreased with increasing N deposition, peaking at 50 kg N ha⁻¹ yr⁻¹ (increased by 8.9%-12.6% compared to control); (4) Microbial network complexity was significantly positively correlated with SOC and recalcitrant C contents (r = 0.76-0.83, p < 0.01), and keystone taxa abundance explained 42.3%-56.8% of the variation in soil C pool components; (5) Tea-oil camellia + clover AFS with high plant diversity had higher microbial network stability and C sequestration capacity under N deposition, which alleviated the negative effects of high N deposition. Our findings indicate that low N deposition enhances soil C sink function by increasing microbial network complexity and optimizing keystone taxa composition, while high N deposition weakens C sink function by simplifying microbial networks. Plant diversity mediates the response of microbial networks to N deposition, thereby regulating soil C sink function. This study provides a new perspective of microbial interactions for understanding the effects of N deposition on soil C cycling in subtropical AFSs and optimizing management practices to enhance C sequestration under global change.

Keywords:

Subtropical Agroforestry; Combined Abiotic Stresses; Rhizosphere Microbiome; Plant Stress-Resistant Metabolism; Coevolution; Ecosystem Adaptability